BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008C05LP1|AL425828
(807 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig301 1139 0.0
>3x_Contig301
Length = 1492
Score = 1139 bits (574), Expect = 0.0
Identities = 585/588 (99%), Gaps = 1/588 (0%)
Strand = Plus / Minus
Query: 1 gatctttcatgaaattcttttctasc-ccatctctttctttttctgtttggactgtttag 59
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 588 gatctttcatgaaattcttttctagttccatctctttctttttctgtttggactgtttag 529
Query: 60 cggtaagttcttcttcttcactccaatattcttctgaatcgggattctcagtgagctttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cggtaagttcttcttcttcactccaatattcttctgaatcgggattctcagtgagctttt 469
Query: 120 caacatcctcgtcattcagaatcttgtttgagttaaaaggtcctttcaaaaaagcgaagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caacatcctcgtcattcagaatcttgtttgagttaaaaggtcctttcaaaaaagcgaagg 409
Query: 180 tgtccgaatctaggaatgcaagaacttttcccaaactcccatttacgagagtggcatcaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgtccgaatctaggaatgcaagaacttttcccaaactcccatttacgagagtggcatcaa 349
Query: 240 tgtttttaatattcataacttgagcaccaactttcaattccagtttttttggagctaaga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgtttttaatattcataacttgagcaccaactttcaattccagtttttttggagctaaga 289
Query: 300 agttgtctagcagtttccttcttaactctacgttgtcgataacaccaccatccgatgctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agttgtctagcagtttccttcttaactctacgttgtcgataacaccaccatccgatgctt 229
Query: 360 cataagtcattgtctcaccaggaagtgttttaagtcttgaataattcgcattgtctacct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 cataagtcattgtctcaccaggaagtgttttaagtcttgaataattcgcattgtctacct 169
Query: 420 ctgctctggtactgaatagctctgctggaacaatttcgtcatttggtaatggacgagata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ctgctctggtactgaatagctctgctggaacaatttcgtcatttggtaatggacgagata 109
Query: 480 gttcagcaaactccttcaatgttcggtccgaaatgacacccattctcatttcatttaaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gttcagcaaactccttcaatgttcggtccgaaatgacacccattctcatttcatttaaca 49
Query: 540 tttcaacaaaacgatgatcaccttgttgtctaaaaactttttgaagga 587
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 tttcaacaaaacgatgatcaccttgttgtctaaaaactttttgaagga 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7847
Number of Sequences: 1807
Number of extensions: 7847
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 807
length of database: 10,358,551
effective HSP length: 16
effective length of query: 791
effective length of database: 10,329,639
effective search space: 8170744449
effective search space used: 8170744449
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)